Package: publipha 0.1.2

publipha: Bayesian Meta-Analysis with Publications Bias and P-Hacking

Tools for Bayesian estimation of meta-analysis models that account for publications bias or p-hacking. For publication bias, this package implements a variant of the p-value based selection model of Hedges (1992) <doi:10.1214/ss/1177011364> with discrete selection probabilities. It also implements the mixture of truncated normals model for p-hacking described in Moss and De Bin (2019) <arxiv:1911.12445>.

Authors:Jonas Moss [aut, cre], Trustees of Columbia University [cph]

publipha_0.1.2.tar.gz
publipha_0.1.2.zip(r-4.7)publipha_0.1.2.zip(r-4.6)publipha_0.1.2.zip(r-4.5)
publipha_0.1.2.tgz(r-4.6-x86_64)publipha_0.1.2.tgz(r-4.6-arm64)publipha_0.1.2.tgz(r-4.5-x86_64)publipha_0.1.2.tgz(r-4.5-arm64)
publipha_0.1.2.tar.gz(r-4.7-arm64)publipha_0.1.2.tar.gz(r-4.7-x86_64)publipha_0.1.2.tar.gz(r-4.6-arm64)publipha_0.1.2.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
publipha/json (API)

# Install 'publipha' in R:

install.packages('publipha', repos = c('https://jonasmoss.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonasmoss/publipha/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

dat.anderson2010 - Studies on Effect of Violent Video Games on Negative Outcomes
dat.baskerville2012 - Studies on Practice Facilitation
dat.cuddy2018 - Studies on the Effect of Power Posing
dat.dang2018 - Meta-analysis on Ego Depletion
dat.motyl2017 - Effect Sizes from 875 Studies in Psychology.

On CRAN:

cpp

3.18 score 3 stars 3 scripts 235 downloads 23 exports 48 dependencies

Last updated from:4b5126ddad. Checks:11 NOTE, 1 OK, 1 FAIL. Indexed: yes.

Target	Result	Time
linux-devel-arm64	NOTE	355
linux-devel-x86_64	NOTE	377
source / vignettes	OK	341
linux-release-arm64	NOTE	342
linux-release-x86_64	NOTE	331
macos-release-arm64	NOTE	214
macos-release-x86_64	NOTE	610
macos-oldrel-arm64	NOTE	211
macos-oldrel-x86_64	NOTE	589
windows-devel	NOTE	447
windows-release	NOTE	421
windows-oldrel	NOTE	401
wasm-release	FAIL	145

Exports:allma cma dmpsnorm dphnorm dpsnorm dsnorm esnorm extract_eta extract_isq extract_tau extract_theta extract_theta0 loo ma phma pmpsnorm pphnorm ppsnorm psma rmpsnorm rphnorm rpsnorm rsnorm

Dependencies:abind backports BH callr checkmate cli cpp11 desc distributional farver generics ggplot2 glue gridExtra gtable inline isoband labeling lifecycle loo magrittr matrixStats numDeriv pillar pkgbuild pkgconfig posterior processx ps QuickJSR R6 RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools S7 scales StanHeaders tensorA tibble truncnorm utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The 'publipha' package.	publipha-package publipha
Studies on Effect of Violent Video Games on Negative Outcomes	dat.anderson2010
Studies on Practice Facilitation	dat.baskerville2012
Studies on the Effect of Power Posing	dat.cuddy2018
Meta-analysis on Ego Depletion	dat.dang2018
Effect Sizes from 875 Studies in Psychology.	dat.motyl2017
Extract Parameters from an 'mafit' Object	ExtractParameters extract_eta extract_isq extract_tau extract_theta extract_theta0
Calculate the 'loo' for an 'ma' object.	loo,mafit-method
Meta-analysis Correcting for Publication Bias or p-hacking	allma cma ma phma psma
Class 'mafit': Fitted Meta-analysis Model	mafit-class
Marginal Publication Selection Meta-analysis Model	dmpsnorm mpsnorm pmpsnorm rmpsnorm
p-hacking Meta-analysis Model	dphnorm phnorm pphnorm rphnorm
Publication Selection Meta-analysis Model	dpsnorm ppsnorm psnorm rpsnorm
Selected Normal Effect Size Distribution	dsnorm esnorm rsnorm snorm